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Training Materials

Materials from past workshops can be found below. Please keep in mind that some of the information about available computing resources and cluster access may be outdated. For current information on how to access the cluster, please refer to our FAQ page or our Documentation section.

Parallel Computing: Parallel Computing using OpenMP slides

Next Steps: Running Biology Workflows on Odyssey slides

Parallel Computing: Introduction to Parallel Computing slides

Next Steps: Troubleshooting Jobs on Odyssey slides

Introduction to Odyssey (v2)

Tips@12: Performing parameter sweeps on Odyssey (slides, codes)

Tips@12: Unix tricks & text processing (talk PDF, long version)

Tips@12: Running ImageJ macros and jobs on Odyssey (github repo)

Tips@12: IPython notebooks on Odyssey (slides, screencast)

Tips on the 10s: Installing Python/Perl Modules and R Packages (slides)

Tips on the 10s: Troubleshooting Jobs on Odyssey (slides handout)

MATLAB Workshop: Nov '14 presentation/demo files

RC Software Carpentry Workshop: Nov '14 materials

Introduction to Odyssey and RC Services (ongoing updates)

Basic Guide to Unix and Command Line Interface

Basic Guide to FAS HPC Resources

Parallel Programming with MPI - Presentation 1, Example Code

Parallel Programming with MPI - Presentation 2, Example Code

ATLAS Distributed Computing

Introduction to Perl and Bioperl

Introduction to Python

Scientific Computing with Python

Biology Research on the Odyssey Cluster

Next Generation Sequencing and Microarray analysis

Writing MPI Programs for Odyssey

R

MATLAB

Mathematica

Web Scraping

Below is a list of high performance computing resources from outside Harvard. If you know of other resources that might be helpful to the Research Computing community, please send links and suggestions to our communications coordinator Gabrielle Naglieri.

MATLAB Demos MATLAB demonstrations and examples from MathWorks

High Performance Computing with CUDA CUDA tutorial by NVIDIA

GPU Computing Webinars Webinars by NVIDIA

LLNL HPC Training Workshops and training resources offered by Lawrence Livermore National Laboratory

SDSC HPC Training Workshops and training resources offered by the San Diego Supercomputer Center

NERSC Training Materials Classes, workshops, and training materials offered by the National Energy Research Scientific Computing Center

TACC Training Materials Classes, workshops, and training materials offered by the Texas Advanced Computing Center

OU Training Materials Classes, workshops, and training materials offered by the University of Oklahoma

Rutgers University Training Video tutorials on how to use MATLAB

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